Webová komponenta pro zobrazování obrazových dat BigDataServeru

Abstract

The goal of this thesis is to propose and implement a web-based component for browsing data provided by BigDataServer. Image data, also named as datasets, comes from the light sheet microscopy technique, which shown the evolution of biological organisms. One possibility of how to visualize data from BigDataServer is to use the BigDataViewer plugin in the Fiji ImageJ application. In the first sections of this thesis, we are describing the principles and technologies of BigDataServer application and BigDataViewer plugin. Description of the practical part contains application design and implementation details. The application consists of two separate components written in Java programing language and React technology. Finally, we evaluate the web-based component which visualizes data from BigDataServer and does basic transformation with image data.

Description

Subject(s)

BigDataServer, BigDataViewer, Big Data, biological data visualization, ImgLib2, affine transformation, XML/HDF5, TransformJ

Citation