Nástroj pro modelování výpočetních pipeline

Abstract

This master's thesis aims to create a tool for visual modeling of computing Snakemake pipelines and to implement this tool into a remote pipeline management system. First of all, the reader is acquainted with this system and with the Snakemake tool. Then, existing tools solving the given issue are researched. In order to realize the solution, different approaches are analyzed, followed by designing a specific solution that proposes extending a web based tool named Elsa Designer. The solution is implemented according to this design and integrated into the pipeline management system. Automatic tests for the realized solution are created and their execution is documented and evaluated.